I did not have to beat my tank. FWIW. If you don't hammer it, it will still look nice later if you decide to remove the cover.
My advice:
Make the cover out of thin metal (thinner than the car hood I used).
Fashion it so it rests on those high spots, not an eighth inch above them.
Make it a little flexible for initial fitment and screw or rivet it together—don't make the ends "flip up for storage" like I did....*
It will fit like that, with the real tank un-molested. A little painter's tape to keep the rubbing down.
But it would be better—and require less fussy fitment—to make it shallower as a one-piece design at the outset.
DO: Roll a bead on each lateral edge.
DO: make the skirts "too deep" and fold or trim them down later for final fit.
DO: remember to flange the area around the filler and the sender
DO: Remember to leave some depth for the hold-down straps.
DM me with any questions.
*There's not enough storage to be had and flipping up the sides is not practical in real life.
PS I used Por-15 and just followed the directions. My tank was new old stock and had no rust to start with.