Michael, the pan is shaped that way to accomodate the seat brackets and to make the angle of the stock Bug seat slope slightly down to the rear -- so you get a little support under your thighs. If you make flat pans, you'll have to mock your seat brackets and seats to see how they'll allow you to sit.
I'll predict two things will happen; you'll find that you sit with your head higher than you like, maybe even touching your top when it's up and with the windshield frame directly in your line of sight, and also that your seats will suddenly feel very uncomfortable.
You may also find that you'll have to modify your pedals' faces to a shallower upright angle to avoid knee pain over time while driving.
If height isn't an issue, you might be able to bolster the front edge of the brackets by fabricating another piece to mount them on, with the same angle of incidence as the original dip in the pan.
It'll have to be wedge-shaped, with the small end of the wedge to the rear of the seat.
In my own experience, I used two half-inch nuts under the front of the seats to re-create the angle I had been used to before the modification. It's really, really uncomfortable on long trips.