I agree with Jim - this is not a headlight problem.
Seen this a lot back in the school bus days where the lights (both external and internal) would flutter about 2 times per second. It is usually RPM sensitive but you have to watch closely to see the fluctuation change.
I would check these things in this order (from least likely to most likely):
1. Check the fan belt tension to the alternator. Also, take a good look at the current belt to see if, on the "V" slopes it has become burnished and shiny. If it is and is really shiny, it may be slipping and correcting tension might not help much. If the V slopes are nicely scuffed (flat, not glossy), then you're all set - just check the tension and move on.
2. IF it has a separate voltage regulator it may be acting up. This is best checked by a good automotive electrical shop (even Autozone, but there you're subject to whatever ability the tech that you get has). It could be a corroded connection to the regulator, and the test tech should know whether to clean the contacts or not.
3. If it has an integrated voltage regulator (inside of the alternator) then, again, it is best checked by a competent Auto Electric shop. The biggest draw to an electrical shop is that they can apply a dynamic load (Think big, honkin' resistor) as part of the test to load down the system and make the alternator circuitry work hard and THAT will quickly point out the problem.
So, what do I think it is? I think one of diodes inside of the alternator that convert AC to DC (and also provide the voltage regulation) is going soft. At least that's what I was usually told when we had a bus with fluctuating lights. Drop off the alternator in the morning (some shops will even remove/replace it there), pick it the next day and you're back in business
BUT FIRST: Get it checked out at that electrical service shop.
Oh, and if you don't do anything, nothing awful will happen. The battery will still charge, the lights will still work, but you will always notice the fluctuating intensity when the headlights are on - this could go on for many months. Irritating, but no damage done and if the diode(s) fully fail, the "ALT" light will come on full all the time and you'll need the service anyway.