OK, so the wiring thing got the best of me over the weekend. So rather than throw in the towel, I spent the weekend researching and getting a game plan together. I am writing this for other's to reference.
I am going to start over tonight.
First, I am going to test that it is for sure the wiring harness. I am going to hot wire tonight and see it turns. If so, it is the Harness. Here is a link to hotwiring http://www.wolfsburgwest.com/wired/wired_03_01/wired_03_01.htm
Next, I will mount the harness. I have selected under the dash up by the drivers door. 90% of my wires flow from here, so it seems like the most logical position.
I'm going to then ground Engine Block to Frame and Battery to Engine Block. This is the best method for grounding. For best grounding, automotive electricians recommend several grounds off the block (if the body is fiberglass). Typically the ground setup is Block to Frame, Frame to Body, Battery Ground to block. I read that average ground only delivers 16% charge to the starter. The better the ground, the less likely you get stuck on the side of the road. "You spend months prepping the body for paint, Spend an hour grounding".
Then I am going to run my wire to each area and clip them. This is so that I know that they are not in contact with anything else.
Then going one by one, I am going to connect and test. I am going to start with the ignition. Then Alternator, then Lights, then everything else.
To test, I am using a low voltage battery charger. This way, if there is a short, I can find it, but it will not blow my fuses.
This will be the last time a project goes bad on me!