Troy:
That template has made the rounds on here, and has saved quite a few people a lot of work and anguish. Neither of my CMC bodies had dimples for windshield corner post location, although the rear lights were clearly outlined. Rocky Cimbrec sent me the windshield post templates (I can't remember if they had the coffee stains, but I think they did!) and that made all the difference. Why they were not included in the CMC build manual we'll all never know.
You're beginning to sound like Alan Merklin (and a number of others on here) when he has had to un-do some of the work done by an original builder in order to make the kit "right".
You get into something, see what they did, then you have to sit back and say to yourself; "What the heck were they thinking?