Hello Mark, yes it solved the body alignment issue and gave me just enough clearance to be able to run 185/65s with my Fuchs. I still had to file the inner wheel well and I could have gotten away from all the work by putting 175s on the car.
My pan is bolted to the tub as I built the car myself and my tube is pretty square and was setup diagonally with an angle iron fixture before welding it back together, I then put new floor pans in it.
If your pan is not welded you should see a seal or beading of silicone all around the sheet metal floor pans to tub pan metal tabs with bolts holding it together.
It took me about four hours to move the body over and for me it was worth it as things that aren't symmetrical drive me nuts and the body on my car still needs work with regard to door alignment as they came to me pre-hung on the body.
If your body is welded that's' another issue for sure, I would take some measurements of the chassis (donor car) to make sure its fairly true before shifting the body on the original chassis. Twisting the body to accommodate the chassis will set up another set of alignment issues in the glass tub.
The bottom line is that getting it to look the way you like is all that matters. The car looks great from the picture so maybe just tuck em in with a different wheel offset and drive it and enjoy.