Gee, I'm surprised that Webbers don't (apparently) have velocity stacks standard. I've got a pair of Dellorto 40's that had stacks installed when I bought them new.
OK, from the Dellorto Tech Book:
1. The use of some form of velocity stack (VS) is recommended over no stacks at all.
2. The purpose of the stack is to straighten and direct the flow of air into the throat of the carb.
3. Stacks should be matched to your air cleaners and should have a minimum of 34mm clearance between the bell of the VS and the under side of the air filter lid to allow proper air flow into the stack's bell.
4. The rolled bell entry helps to reduce turbulence and to contain fuel stand-off (a cloud of vapor surrounding the top of the carb or velocity stacks and caused by valve overlap and sharing an intake manifold runner with two intake valves - not common to dual-port Air Cooled VW's due to one intake valve per carb bore).
5. Using taller VS's showed marked improvement in mid-range torque and upper end power under certain conditions. "For example, you won't see any improvement when you install tall (6") stacks on a set of 36mm carbs running on a 1641cc engine. Add the same 6 inch stacks to a pair of 40mm carbs running on a heavy breathing 1915cc engine and you'll see a noticeable increase in performance."
6. Taller stacks will effect the final choice of main jets due to the additional ram effect of the increased air flow. Typically, moving up one or two jet sizes will better match the fuel to the increased air flow.
7. Running open stacks can be detrimental to your engine's life due to entry of dirt and dust causing subsequent engine wear.
Just for the heck of it, I went out in the garage and checked, and my stacks are around 3" tall, and I have over 1 1/2" between the VS bells and the cleaner lid. Looks like a trade-off between all-out performance of taller stacks on a drag car, and fitting them into a daily driver with sensibly sized air cleaners.
Hope this helps (or encourages more discussion)
Gordon